EMERGING INFECTIOUS RNA VIRUSES: is recombination an emergence driver?

Autores

  • Armando Aurélio Mabasso
  • Alda Ester Chongo
  • Alberto Romão Sineque

Palavras-chave:

Emerging, re-emerging diseases, driving factors, recombination, RNA viruses

Resumo

As doenças infecciosas emergentes constituem um grande problema de saúde pública e na sua maioria estão associadas a vírus ARN. Factores relacionados com o surgimento das infecções patogênicas emergentes/reemergentes são generalizados para todos os tipos de patógenos. Consequentemente, a maior parte da pesquisa actual pouco reconhece o impacto da recombinação viral como um dos factores principais para o surgimento e evolução de vírus com ARN. Esta revisão descreve alguns dos factores associados à doenças infecciosas emergentes/reemergentes actualmente reconhecidos e avalia o impacto dos problemas de saúde que advém da recombinação de vírus ARN. Após uma extensa revisão da literatura, os factores relacionados com a emergência foram categorizados de acordo com a força de sua associação com a adaptação aos vírus ARN, e também foram categorizados em relação ao papel que desempenham na transmissão do vírus. Problemas de saúde associados a evolução e diversidade de patógenos, e as mudanças no uso da terra foram fortemente ligadas à recombinação dos vírus ARN, enquanto as viagens internacionais e o comércio internacional foram intimamente ligados à disseminação dos vírus ARN e outros patógenos. A recombinação dentro e entre genomas de vírus tem sido cada vez mais reconhecida como um dos principais impulsionadores da evolução dos vírus. Este estudo apoia a visão de que a evolução e a diversidade de patógenos, juntamente com as mudanças no uso da terra, têm um papel importante na emergência/reemergencia de doenças associadas aos vírus ARN. O mesmo não aconteceu com as viagens e o comércio internacional, que são mais responsáveis por sustentar ou disseminar uma infecção já estabelecida. As combinações dos factores não foram examinados, mas é provável que algumas também tenham impacto na recombinação viral, embora a extensão disso possa variar de acordo com o vírus específico que está sendo estudado. Estudos posteriores poderão abordar esse aspecto.

Referências

AAZIZ, R; TEPFER, M. Recombination in RNA viruses and in virus-resistant transgenic plants. The Journal of general virology. v. 80, n. 6, p.1339-1346, 1999.

ANDINO, R.; DOMINGO, E. Viral quasispecies. Virology. v. 479-480, pp. 46–51, 2015.

AUSTERMANN-BUSCH, S.; BECHER, P. RNA structural elements determine frequency and sites of nonhomologous recombination in an animal plus-strand RNA virus. Journal of virology, v.86 n.13, p.7393–7402, 2012.

BIEBRICHER, C. K.; EIGEN, M. The error threshold. Virus Research, v.107, n.2, p.117-127, 2004.

BLAZES, D.L.; RIDDLE, M. S.; RYAN, E. T. The local importance of global infectious diseases. Tropical diseases, travel medicine and vaccines, v.5, p.1-3, 2015.

BROWN, D. W. Threat to humans from virus infections on non-human primates. Rev Med Virol, v.7, n.4, p.239-246, 1997.

BURKE J. P. Infection control-a problem for patient safety. N Engl J Med, v.348, p.651–6, 2003.

CARRASCO-HERNANEZ, R. et al. Are RNA Viruses Candidate Agents for the Next Global Pandemic? A review. ILAR Journal, v.58, n.3, p.343-358, 2017.

CARTER, J.; SAUNDERS, V. Virology: principles and applications, John Wiley & Sons, Ltd. 2007.

CENTRE FOR DISEASE CONTROL AND PREVENTION (CDC a). Aedes albopictus introduction into continental Africa. MMWR, v.40, n.48, p.836–8, 1991.

CENTRE FOR DISEASE CONTROL AND PREVENTION (CDC b). Eastern Equine Encephalitis Virus Associated with Aedes albopictus Florida. MMWR, v.41, n.7, p.115-121, 1992.

CENTRE FOR DISEASE CONTROL AND PREVENTION. Emerging Infectious diseases. v.26, n. 9, pp. 44, 2020.

COBEY, S.; HENSLEY, S. E. (2017). Immune history and influenza virus susceptibility. Current opinion in virology. v. 22, pp. 105–111, 2017.

COFFIN, J. M. Structure, replication, and recombination of retrovirus genomes: some unifying hypotheses. J Gen Virol. v.42, n.1, p.1-26, 1997.

CUTHBERT, J. A. Hepatitis A: Old and New, Clinical Microbiology Reviews, v.14, n.1, p.38-58, 2001.

Delviks-Frankenberry, K.; Galli, A.; Nikolaitchik, O.; Mens, H.; Pathak, V.K.; Hu, W. S. Mechanisms and Factors that Influence High Frequency Retroviral Recombination. Viruses. v.3, p.1650-1680, 2011

DOMINGO, E. et al. A. Viruses as quasispecies: biological implications, Curr Top MicrobiolImmunol, v.299, p.51-82, 2006.

DOMINGO, E.; SHELDON, J.; PERALES, C. Viral quasispecies evolution. Microbiology and molecular biology reviews: MMBR, v.76, n.2, p.159–216, 2012.

ESSERE, B. et al. Critical role of segment-specific packaging signals in genetic re-assortment of Influenza A viruses. Proceedings of the National Academy of Sciences of the United States of America, v.110, n.40, p.E3840–E3848, 2013.

GIBBS, M. J.; WEILLER, G. F. Evidence that a plant virus switched hosts to infect a vertebrate and then recombined with a vertebrate-infecting virus. Proceedings of the National Academy of Sciences of the United States of America, v.96, n.14, p.8022–8027, 1999

GUBLER D. J. Dengue and Dengue haemorrhagic fever. Clinical microbiology reviews, v.11, n.3, p.480–496, 1998.

HAJJAR, S. A.; MEMISH, Z. A.; MCINTOSH, K. Middle East Respiratory Syndrome Coronavirus (MERS-CoV): a perpetual challenge. Annals of Saudi medicine, v.33, n.5, p.427–436, 2013.

HASSAN, M. Z. et al. Nipah Virus Contamination of Hospital Surfaces during Outbreaks, Bangladesh, 2013-2014. Emerging infectious diseases, v.24, n.1, p.15–21, 2018.

HJELLE, B; GLASS, G. E. Outbreak of hantavirus infection in the Four Corners region of the United States in the wake of the 1997-1998 El Nino-southern oscillation. J Infect Dis. v.181, n.5, p.1569-1573, 2000.

HOLMES, E.C. Error thresholds and the constraints to RNA virus evolution. Trends in Microbiology, v.11, n.12, p.543-546, 2003.

HUNG L. S. The SARS epidemic in Hong Kong: what lessons have we learned? Journal of the Royal Society of Medicine, v.96, n.8, p.374–378, 2003.

HWANG, C. K.; SVAROVSKAIA, E. S.; PATHAK, V. K. Dynamic copy choice: steady state between murine leukemia virus polymerase and polymerase-dependent RNase H activity determines frequency of in vivo template switching. Proceedings of the National Academy of Sciences of the United States of America, v.98, n.21, p.12209–12214, 2001.

JONES, K. E. et al. Global trends in emerging infectious diseases. Nature, v.451, n.7181, p.990–993, 2008.

KHATCHIKIAN, D.; ORLICH, M.; ROTT, R. Increased viral pathogenicity after insertion of a 28S ribosomal RNA sequence into the haemagglutinin gene of an Influenza virus. Nature, v.340, p.156-157, 1989.

KNOBLER, S.; MAHMOUD A.; LEMON, S. Learning from SARS: preparing for the next disease outbreak. Forum on Microbial Threats: p.1-15, 2004.

LEROY, E.M. et al. Multiple Ebola virus transmission events and rapid decline on central African wildlife. Science, v.303, n.5658, p.387-390, 2004.

LIN, C. L. et al. Disease caused by rotavirus infection. The open virology journal, v.8, p.14–19, 2014.

MAGNUS, M. et al. Risk of Zika virus transmission by blood donations in Brazil. Haematology, transfusion and cell therapy, v.40, n.3, p.250–254, 2018.

MALIM, M.H.; EMERMAN, M. HVV-1 sequence variation: drift, shift, and attenuation. Cell, v.104, n.4, p.469-472, 2001.

MARA, D. et al. Sanitation and health. PLoS medicine, v.7, n.11, p.1-7, 2010.

MARSH, G. A; RABADÁN. R.; LEVINE A. J., PALESE, P. Highly conserved regions of influenza a virus polymerase gene segments are critical for efficient viral RNA packaging. J Virol. v.82, n.5, p.2295-2304, 2008.

MCNEILL, W. H. Plagues and peoples, New York. Anchor Press/ Doubleday, p. 94, 1976. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1326437/

McVEAN, G.; AWADALLA, P.; FEARNHEAD, P. A coalescent-based method for detecting and estimating recombination from gene sequences. Genetics, v.160, n.3, p.1231–1241, 2002.

MEHTA, Y. et al. Guidelines for prevention of hospital acquired infections. Indian journal of critical care medicine: peer-reviewed, official publication of Indian Society of Critical Care Medicine, v.18, n.3, p.149–163, 2014.

METCALF, C. J. E.; BIRGER, R. B.; FUNK, S.; KOUYOS, R. D.; LLOYD-SMITH, J. O.; JANSEN, V. A. A. Five challenges in evolution and infectious diseases. Epidemics. v. 10, pp. 40-44, 2015.

MINER, J. J.; DIAMOND, M. S. Zika Virus Pathogenesis and Tissue Tropism. Cell host & microbe, v.21, n.2, p.134–142, 2017

MORSE, S. S. Factors in the Emergence of Infectious Diseases. Emerging Infectious Diseases, v.1, n.1, p.7-15, 1995.

MURRAY, P.; ROSENTHAL, K.; PFALLER, M. Medical Microbiology, 8th Edition, Elsevier, p.848, 2016.

NASH, D. et al. The outbreak of West Nile virus infection in the New York City area in 1999. N Engl J Med, v.344, n.24, p.1807-1814, 2001.

NELSON, M. et al. Multiple re-assortment events in the evolutionary history of H1N1 Influenza A virus since 1918. PLoS pathogens, v.4, n.2, p.1-12, 2008.

NICHOL, S. T.; ARIKAWA, J.; KAWAOKA, Y. Emerging viral diseases, v.97, n.23, p.12411-12412, 2000.

NICHOL, S. T.; ARIKAWA, J.; KAWAOKA, Y. Emerging viral diseases. pp. 1-2, 2015.

Nikolenko, G. N; Svarovskaia, E. S; Delviks, K. A; Pathak, V. K. Antiretroviral drug resistance mutations in human immunodeficiency virus type 1 reverse transcriptase increase template-switching frequency. J Virol. v.78, n.16, p.8761-8770, 2004.

NORA, T. et al. Contribution of recombination to the evolution of human immunodeficiency viruses expressing resistance to antiretroviral treatment. Journal of virology, v.81, n.14, p.7620–7628, 2007.

ONAFUWA-NUGA, A.; TELESNITSKY, A. The remarkable frequency of human immunodeficiency virus type 1 genetic recombination. Microbiology and molecular biology reviews: MMBR, v.73, n.3, p.451–480, 2009.

PATHAK, V. K.; HU, W.S. “Might as well jump!” Template switching by retroviral reverse transcriptase, defective genome formation, and recombination. Seminars in Virology, v.8, n.2, p.141-150, 1997.

PATZ, J. A et al. Effects of environmental change on emerging parasitic diseases. International Journal of Parasitology, v.30, n.12-13, p.1395-1405, 2000.

PAVIA, A. T. Germs on a plane: aircraft, international travel, and the global spread of disease. J Infect Dis. v.195, n.5, p.621-622, 2007.

PÉREZ-LOSADA, M. et al. Recombination in viruses: mechanisms, methods of study, and evolutionary consequences. Infection, genetics and evolution: journal of molecular epidemiology and evolutionary genetics in infectious diseases, v.30, p.296–307, 2015.

PETERSEN, L. R.; BRAULT, A. C.; NASCI, R. S. West Nile virus: review of the literature. JAMA, v.310, n.3, p.308–315, 2013.

PRÜSS-USTÜN, A.; BONJOUR, S.; CORVALÁN, C. The impact of the environment on health by country: a meta-synthesis. Environmental health: a global access science source, v.7, p.1-10, 2008.

RABADAN, R.; LEVINE, A. J.; KRASNITZ, M. Non-random re-assortment in human Influenza A viruses. Influenza and other respiratory viruses, v.2, n.1, p.9-22, 2008.

ROOSSINCK, M. J. Symbiosis versus competition in plant virus evolution. Nature Reviews Microbiology, v.3, p.917-924, 2005.

SCHEEL, T. K. et al. Productive homologous and non-homologous recombination of hepatitis C virus in cell culture. PLoS pathogens, v.9 n.3, p.1-12, 2013. https://pubmed.ncbi.nlm.nih.gov/23555245/

SHRINER, D., RODRIGO, A. G., NICKLE, D. C., & MULLINS, J. I. Pervasive genomic recombination of HIV-1 in vivo. Genetics. v.167, n.4, p.1573–1583, 2004.

SIMON-LORIERE, E.; HOLMES, E. C. Why do RNA viruses recombine? Nature reviews. Microbiology, v.9, n.8, p.617–626, 2011.

STODDARD, S. T. et al. The Role of Human Movement in the Transmission of Vector-Borne Pathogens. PLOS Neglected Tropical Diseases, v.3, n.7, p.1-9, 2009.

TAUCHER, C.; BERGER, A.; MANDL, C. W. A trans-Complementing Recombination Trap Demonstrates a Low Propensity of Flaviviruses for Intermolecular Recombination. Journal if Virology, v.84, n.1, p.599-611, 2010.

VIGNUZZI, M.; ANDINO, R. Closing the gap: the challenges in converging theoretical, computational, experimental and real-life studies in virus evolution. Current opinion in virology, v.2, n.5, p.515–518, 2012.

WEBER, D. J. et al. Emerging infectious diseases: Focus on infection control issues for novel coronaviruses (Severe Acute Respiratory Syndrome-CoV and Middle East Respiratory Syndrome-CoV), haemorrhagic fever viruses (Lassa and Ebola), and highly pathogenic avian Influenza viruses, A(H5N1) and A(H7N9). American Journal of Infection Control, v.44, n.5, p. E91-E100, 2016.

WILSON M. E. Travel and the emergence of infectious diseases. Emerging infectious diseases, v.1, n.2, p.39–46, 1995.

WOOLHOUSE, M. E. J.; ADAIR, K. Ecological and taxonomic variation among human RNA viruses. Journal of Clinical Virology. v.58, n.2, p.344-345, 2013.

WOOLHOUSE, M.; GOWTAGE-SEQUERIA, S. Host Range and Emerging and Remerging Pathogens. Emerging Infectious Diseases, v.11, n.12, p.1842-1847, 2005.

WORLD HEALTH ORGANIZATION. A brief guide to emerging infectious diseases and zoonoses.pp.480, 2015.

ZANLUCA, C.; DE NORONHA, L.; DUARTE DOS SANTOS, C. N. Maternal-foetal transmission of the zika virus: An intriguing interplay. Tissue barriers, v.6, n.1, p.e1402143-11, 2018.

ZÁRATE, S. et al. Human Virome, Achieves of Medical Research, v.48, n.8, p.701-716, 2017.

ZHANG, J.; TEMIN, H. M. Retrovirus recombination depends on the length of sequence identity and is not error prone. Journal of virology, v.68, n.4, p.2409–2414, 1994.

ZHUANG, J. et al. Human immunodeficiency virus type 1 recombination: rate, fidelity, and putative hot spots. J. Virol, v.76, p.11273–11282, 2002.

ZIMMER, S. M.; AND BURKE, D. S. Historical perspective – emergence of Influenza A (H1N1) viruses. N Engl J Med, v.361, p.279-285, 2009.

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Publicado

2021-01-08

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Mabasso, A. A. ., Chongo, A. E. ., & Sineque, A. R. . (2021). EMERGING INFECTIOUS RNA VIRUSES: is recombination an emergence driver?. Revista Científica Da UEM: Série Ciências Biomédicas E Saúde Pública. Obtido de http://196.3.97.23/revista/index.php/cbsp/article/view/30

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